String Matching on a Multicore GPU Using CUDA
Corfu, Greece
September 10-September 12
ISBN: 978-0-7695-3788-7
Fast Exact String Matching on the GPU
Michael C. Schatz and Cole Trapnell
http://www.cbcb.umd.edu/software/cmatch/ (code, data)
Online Approximate String Matching with CUDA
Mikael Onsj¨o (mikael@is.titech.ac.jp), Yoshinori Aono
group: “patternmatchers”, supervisor: Osamu Watanabe
Tokyo Institute of Technology
(code) Approximate patternmatching with CUDA and Nvidia’s HPC T1 processor
http://odinlake.net/wordpress/?s=cuda
Small experiment with CUDA on a Tesla card of cc 1.3
kmp_algorithm (code)
I have written a string matching algorithm - the classical KMP algorithm when the model and between the main strings there are many..http://odinlake.net/wordpress/?s=cuda
also protein search pattern algorithms are similar:
Needleman wunsh
smith waterman
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